SNP Detail For rs10134944
1.Mapping Information
Human SNP ID rs10134944
Human chromosome chr14
Human SNP position 57652478
Pig chromosome chr1
Pig SNP position 207618908
2.Annotation Information
PubMed ID17554300
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/17554300
StudyGenome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.
Disease/TraitBipolar disorder
Initial sample1,868 European ancestry cases, 2,938 European ancestry controls
Replication sampleNA
Region14q23.1
Chromosome idchr14
Chromosome position57652478
Reported geneNR
Mapped geneSLC35F4
Upstream gene id
Downstream gene id
SNP gene ids341880
Upstream gene distance
Downstream gene distance
SNP risk allelers10134944-T
SNPsrs10134944
Merged0
SNP id current10134944
Contextintron_variant
Intergenic0
Allele frequency0.09
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.45
%95 Ci[1.24-1.68]
PlatformAffymetrix [469557]
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST000044
PubMed ID21254220
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/21254220
StudyPropensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.
Disease/TraitBipolar disorder
Initial sample1,868 European ancestry cases, 2,938 European ancestry controls
Replication sampleNA
Region14q23.1
Chromosome idchr14
Chromosome position57652478
Reported geneNR
Mapped geneSLC35F4
Upstream gene id
Downstream gene id
SNP gene ids341880
Upstream gene distance
Downstream gene distance
SNP risk allelers10134944-?
SNPsrs10134944
Merged0
SNP id current10134944
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(dominant)
Or beta
%95 Ci
PlatformAffymetrix [NR]
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST000961