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SNP Detail For rs10133840
1.Mapping Information
| Human SNP ID | rs10133840 |
|---|---|
| Human chromosome | chr14 |
| Human SNP position | 94944192 |
| Pig chromosome | chr7 |
| Pig SNP position | 123426065 |
2.Annotation Information
| PubMed ID | 23192594 |
|---|---|
| Journal | Hum Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23192594 |
| Study | Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women__s Health Initiative SHARe Study. |
| Disease/Trait | Body mass index (interaction) |
| Initial sample | 8,203 African American females, 3,484 Hispanic females |
| Replication sample | NA |
| Region | 14q32.13 |
| Chromosome id | chr14 |
| Chromosome position | 94944192 |
| Reported gene | RPL15P2, DICER1 |
| Mapped gene | RPL15P2 - DICER1 |
| Upstream gene id | 326279 |
| Downstream gene id | 23405 |
| SNP gene ids | |
| Upstream gene distance | 142673 |
| Downstream gene distance | 142036 |
| SNP risk allele | rs10133840-C |
| SNPs | rs10133840 |
| Merged | 0 |
| SNP id current | 10133840 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.14 |
| P value | 0.000001 |
| Pvalue mlog | 6 |
| P value text | (Hispanic, Dietary energy) |
| Or beta | 0.01 |
| %95 Ci | [0.005-0.01] unit decrease |
| Platform | Affymetrix [706791] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST001753 |
| PubMed ID | 23192594 |
| Journal | Hum Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23192594 |
| Study | Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women__s Health Initiative SHARe Study. |
| Disease/Trait | Body mass index (interaction) |
| Initial sample | 8,203 African American females, 3,484 Hispanic females |
| Replication sample | NA |
| Region | 14q32.13 |
| Chromosome id | chr14 |
| Chromosome position | 94944192 |
| Reported gene | RPL15P2, DICER1 |
| Mapped gene | RPL15P2 - DICER1 |
| Upstream gene id | 326279 |
| Downstream gene id | 23405 |
| SNP gene ids | |
| Upstream gene distance | 142673 |
| Downstream gene distance | 142036 |
| SNP risk allele | rs10133840-C |
| SNPs | rs10133840 |
| Merged | 0 |
| SNP id current | 10133840 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | NR |
| P value | 0.0000004 |
| Pvalue mlog | 6.39794000867203 |
| P value text | (Dietary energy) |
| Or beta | 0.01 |
| %95 Ci | [NR] unit decrease |
| Platform | Affymetrix [706791] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST001753 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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