SNP Detail For rs1012621
1.Mapping Information
Human SNP ID rs1012621
Human chromosome chr20
Human SNP position 2325666
Pig chromosome chr17
Pig SNP position 37601181
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region20p13
Chromosome idchr20
Chromosome position2325666
Reported geneTGM3
Mapped geneTGM3
Upstream gene id
Downstream gene id
SNP gene ids7053
Upstream gene distance
Downstream gene distance
SNP risk allelers1012621-?
SNPsrs1012621
Merged0
SNP id current1012621
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text(Shared)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitatopic eczema, psoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000274, http://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740