Human SNP ID | rs1012621 |
---|---|
Human chromosome | chr20 |
Human SNP position | 2325666 |
Pig chromosome | chr17 |
Pig SNP position | 37601181 |
PubMed ID | 25574825 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25574825 |
Study | Genome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms. |
Disease/Trait | Inflammatory skin disease |
Initial sample | 2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls |
Replication sample | NA |
Region | 20p13 |
Chromosome id | chr20 |
Chromosome position | 2325666 |
Reported gene | TGM3 |
Mapped gene | TGM3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7053 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1012621-? |
SNPs | rs1012621 |
Merged | 0 |
SNP id current | 1012621 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (Shared) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 5200000] |
CNV | N |
Mapped trait | atopic eczema, psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000274, http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002740 |