SNP Detail For rs10125054
1.Mapping Information
Human SNP ID rs10125054
Human chromosome chr9
Human SNP position 112035757
Pig chromosome chr1
Pig SNP position 283603438
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region9q31.3
Chromosome idchr9
Chromosome position112035757
Reported geneSUSD1
Mapped geneLOC105376220 - SUSD1
Upstream gene id105376220
Downstream gene id64420
SNP gene ids
Upstream gene distance4460
Downstream gene distance5024
SNP risk allelers10125054-A
SNPsrs10125054
Merged0
SNP id current10125054
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequency0.302
P value0.000004
Pvalue mlog5.39794000867203
P value text(Sedentary activity )
Or beta0.03
%95 Ci[NR] min/d increase
PlatformIllumina [899892]
CNVN
Mapped traitphysical activity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003940
Study accessionGCST001762