Human SNP ID | rs10124907 |
---|---|
Human chromosome | chr9 |
Human SNP position | 25659639 |
Pig chromosome | chr1 |
Pig SNP position | 219732702 |
PubMed ID | 25085501 |
---|---|
Journal | BMC Med Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/25085501 |
Study | Integrated Genome-wide Association, Coexpression Network, and Expression Single Nucleotide Polymorphism Analysis Identifies Novel Pathway in Allergic Rhinitis. |
Disease/Trait | Allergic rhinitis |
Initial sample | 872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls |
Replication sample | NA |
Region | 9p21.2 |
Chromosome id | chr9 |
Chromosome position | 25659639 |
Reported gene | TUSC1 |
Mapped gene | LOC105375997 - TUSC1 |
Upstream gene id | 105375997 |
Downstream gene id | 286319 |
SNP gene ids | |
Upstream gene distance | 71070 |
Downstream gene distance | 16750 |
SNP risk allele | rs10124907-? |
SNPs | rs10124907 |
Merged | 0 |
SNP id current | 10124907 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | (Latino) |
Or beta | 1.43 |
%95 Ci | [1.19-1.75] |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | allergic rhinitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005854 |
Study accession | GCST002550 |