SNP Detail For rs10124907
1.Mapping Information
Human SNP ID rs10124907
Human chromosome chr9
Human SNP position 25659639
Pig chromosome chr1
Pig SNP position 219732702
2.Annotation Information
PubMed ID25085501
JournalBMC Med Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/25085501
StudyIntegrated Genome-wide Association, Coexpression Network, and Expression Single Nucleotide Polymorphism Analysis Identifies Novel Pathway in Allergic Rhinitis.
Disease/TraitAllergic rhinitis
Initial sample872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls
Replication sampleNA
Region9p21.2
Chromosome idchr9
Chromosome position25659639
Reported geneTUSC1
Mapped geneLOC105375997 - TUSC1
Upstream gene id105375997
Downstream gene id286319
SNP gene ids
Upstream gene distance71070
Downstream gene distance16750
SNP risk allelers10124907-?
SNPsrs10124907
Merged0
SNP id current10124907
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text(Latino)
Or beta1.43
%95 Ci[1.19-1.75]
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitallergic rhinitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005854
Study accessionGCST002550