SNP Detail For rs10124550
1.Mapping Information
Human SNP ID rs10124550
Human chromosome chr9
Human SNP position 16512750
Pig chromosome chr1
Pig SNP position 230018532
2.Annotation Information
PubMed ID23934736
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23934736
StudyGenome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
Disease/TraitMetabolite levels (Pyroglutamine)
Initial sample1,260 African American individuals
Replication sampleNA
Region9p22.3
Chromosome idchr9
Chromosome position16512750
Reported geneBNC2
Mapped geneBNC2
Upstream gene id
Downstream gene id
SNP gene ids54796
Upstream gene distance
Downstream gene distance
SNP risk allelers10124550-A
SNPsrs10124550
Merged0
SNP id current10124550
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta0.16
%95 Ci[0.09-0.21] unit increase
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitpyroglutamine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005408
Study accessionGCST002118