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SNP Detail For rs10122902
1.Mapping Information
| Human SNP ID | rs10122902 |
|---|---|
| Human chromosome | chr9 |
| Human SNP position | 27556782 |
| Pig chromosome | chr10 |
| Pig SNP position | 43551701 |
2.Annotation Information
| PubMed ID | 20801717 |
|---|---|
| Journal | Lancet Neurol |
| Link | www.ncbi.nlm.nih.gov/pubmed/20801717 |
| Study | Chromosome 9p21 in sporadic amyotrophic lateral sclerosis in the UK and seven other countries: a genome-wide association study. |
| Disease/Trait | Amyotrophic lateral sclerosis |
| Initial sample | 4,857 European ancestry cases, 8,987 European ancestry controls |
| Replication sample | NA |
| Region | 9p21.2 |
| Chromosome id | chr9;9 |
| Chromosome position | 27556782;27543283 |
| Reported gene | intergenic |
| Mapped gene | C9orf72; MOB3B - C9orf72 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs10122902-G; rs3849942-A |
| SNPs | rs10122902; rs3849942 |
| Merged | 0 |
| SNP id current | |
| Context | synonymous_variant; downstream_gene_variant |
| Intergenic | |
| Allele frequency | 0.23 |
| P value | 0.0000000008 |
| Pvalue mlog | 9.09691001300805 |
| P value text | |
| Or beta | |
| %95 Ci | |
| Platform | Illumina [227475] |
| CNV | N |
| Mapped trait | amyotrophic lateral sclerosis |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000253 |
| Study accession | GCST000820 |
| PubMed ID | 20801717 |
| Journal | Lancet Neurol |
| Link | www.ncbi.nlm.nih.gov/pubmed/20801717 |
| Study | Chromosome 9p21 in sporadic amyotrophic lateral sclerosis in the UK and seven other countries: a genome-wide association study. |
| Disease/Trait | Amyotrophic lateral sclerosis |
| Initial sample | 4,857 European ancestry cases, 8,987 European ancestry controls |
| Replication sample | NA |
| Region | 9p21.2 |
| Chromosome id | chr9;9 |
| Chromosome position | 27556782;27543283 |
| Reported gene | intergenic |
| Mapped gene | C9orf72; MOB3B - C9orf72 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs10122902-G; rs3849942-G |
| SNPs | rs10122902; rs3849942 |
| Merged | 0 |
| SNP id current | |
| Context | synonymous_variant; downstream_gene_variant |
| Intergenic | |
| Allele frequency | 0.57 |
| P value | 0.00000000005 |
| Pvalue mlog | 10.3010299956639 |
| P value text | |
| Or beta | |
| %95 Ci | |
| Platform | Illumina [227475] |
| CNV | N |
| Mapped trait | amyotrophic lateral sclerosis |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000253 |
| Study accession | GCST000820 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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