SNP Detail For rs10119
1.Mapping Information
Human SNP ID rs10119
Human chromosome chr19
Human SNP position 44903416
Pig chromosome chr6
Pig SNP position 47266411
2.Annotation Information
PubMed ID25644384
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25644384
StudyGenetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53鈥?49).
Disease/TraitCognitive function
Initial sample51,719 European ancestry individuals 1,473 Erasmus Rupchen Family individuals, 327 Korculan individuals, 430 Orcadian individuals
Replication sampleNA
Region19q13.32
Chromosome idchr19
Chromosome position44903416
Reported geneTOMM40
Mapped geneTOMM40
Upstream gene id
Downstream gene id
SNP gene ids10452
Upstream gene distance
Downstream gene distance
SNP risk allelers10119-?
SNPsrs10119
Merged0
SNP id current10119
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta0.0446
%95 Ci[0.030-0.059] unit decrease
PlatformAffymetrix, Illumina [2478500] (imputed)
CNVN
Mapped traitcognition
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003925
Study accessionGCST002774