SNP Detail For rs1011397
1.Mapping Information
Human SNP ID rs1011397
Human chromosome chr2
Human SNP position 143932550
Pig chromosome chr15
Pig SNP position 8590015
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2q22.3
Chromosome idchr2
Chromosome position143932550
Reported geneGTDC1
Mapped geneLOC105373653 - LOC101928386
Upstream gene id105373653
Downstream gene id101928386
SNP gene ids
Upstream gene distance156436
Downstream gene distance4517
SNP risk allelers1011397-G
SNPsrs1011397
Merged0
SNP id current1011397
Contextupstream_gene_variant
Intergenic1
Allele frequency0.197
P value0.000008
Pvalue mlog5.09691001300805
P value text(Energy balance )
Or beta0.04
%95 Ci[NR] kcal/d increase
PlatformIllumina [899892]
CNVN
Mapped traitenergy intake
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003939
Study accessionGCST001762