SNP Detail For rs10109725
1.Mapping Information
Human SNP ID rs10109725
Human chromosome chr8
Human SNP position 3506516
Pig chromosome chr15
Pig SNP position 39708624
2.Annotation Information
PubMed ID26030696
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26030696
StudyA Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.
Disease/TraitEmphysema imaging phenotypes
Initial sample5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls
Replication sampleNA
Region8p23.2
Chromosome idchr8
Chromosome position3506516
Reported geneCSMD1
Mapped geneCSMD1
Upstream gene id
Downstream gene id
SNP gene ids64478
Upstream gene distance
Downstream gene distance
SNP risk allelers10109725-T
SNPsrs10109725
Merged
SNP id current10109725
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text(%LAA-950, All)
Or beta0.28
%95 Ci[0.0056-0.5544] unit increase
PlatformIllumina [7600000] (imputed)
CNVN
Mapped traitemphysema imaging measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007626
Study accessionGCST002945