SNP Detail For rs10109414
1.Mapping Information
Human SNP ID rs10109414
Human chromosome chr8
Human SNP position 23893638
Pig chromosome chr14
Pig SNP position 8867523
2.Annotation Information
PubMed ID20383146
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20383146
StudyNew loci associated with kidney function and chronic kidney disease.
Disease/TraitChronic kidney disease
Initial sampleUp to 67,093 European ancestry individuals
Replication sampleUp to 22,982 European ancestry individuals
Region8p21.2
Chromosome idchr8
Chromosome position23893638
Reported geneSTC1
Mapped geneSTC1 - LOC105379328
Upstream gene id6781
Downstream gene id105379328
SNP gene ids
Upstream gene distance38831
Downstream gene distance196462
SNP risk allelers10109414-T
SNPsrs10109414
Merged0
SNP id current10109414
Contextintergenic_variant
Intergenic1
Allele frequency0.42
P value0.00000001
Pvalue mlog8
P value text(eGFRcrea)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitchronic kidney disease, serum creatinine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003884, http://www.ebi.ac.uk/efo/EFO_0004518
Study accessionGCST000649