SNP Detail For rs10102164
1.Mapping Information
Human SNP ID rs10102164
Human chromosome chr8
Human SNP position 54509054
Pig chromosome chr4
Pig SNP position 83870300
2.Annotation Information
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitLDL cholesterol
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region8q11.23
Chromosome idchr8
Chromosome position54509054
Reported geneSOX17
Mapped geneLOC100129098 - SEC11B
Upstream gene id100129098
Downstream gene id157708
SNP gene ids
Upstream gene distance38628
Downstream gene distance13436
SNP risk allelers10102164-A
SNPsrs10102164
Merged0
SNP id current10102164
Contextintergenic_variant
Intergenic1
Allele frequency0.21
P value0.00000000004
Pvalue mlog10.397940008672
P value text
Or beta0.032
%95 Ci[NR] unit increase
PlatformNR [NR] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST002222
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitCholesterol, total
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region8q11.23
Chromosome idchr8
Chromosome position54509054
Reported geneSOX17
Mapped geneLOC100129098 - SEC11B
Upstream gene id100129098
Downstream gene id157708
SNP gene ids
Upstream gene distance38628
Downstream gene distance13436
SNP risk allelers10102164-A
SNPsrs10102164
Merged0
SNP id current10102164
Contextintergenic_variant
Intergenic1
Allele frequency0.21
P value0.00000000005
Pvalue mlog10.3010299956639
P value text
Or beta0.03
%95 Ci[NR] unit increase
PlatformNR [NR] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002221