Human SNP ID | rs10102164 |
---|---|
Human chromosome | chr8 |
Human SNP position | 54509054 |
Pig chromosome | chr4 |
Pig SNP position | 83870300 |
PubMed ID | 24097068 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24097068 |
Study | Discovery and refinement of loci associated with lipid levels. |
Disease/Trait | LDL cholesterol |
Initial sample | 94,595 European ancestry individuals |
Replication sample | 93,982 European ancestry individuals |
Region | 8q11.23 |
Chromosome id | chr8 |
Chromosome position | 54509054 |
Reported gene | SOX17 |
Mapped gene | LOC100129098 - SEC11B |
Upstream gene id | 100129098 |
Downstream gene id | 157708 |
SNP gene ids | |
Upstream gene distance | 38628 |
Downstream gene distance | 13436 |
SNP risk allele | rs10102164-A |
SNPs | rs10102164 |
Merged | 0 |
SNP id current | 10102164 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.21 |
P value | 0.00000000004 |
Pvalue mlog | 10.397940008672 |
P value text | |
Or beta | 0.032 |
%95 Ci | [NR] unit increase |
Platform | NR [NR] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST002222 |
PubMed ID | 24097068 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24097068 |
Study | Discovery and refinement of loci associated with lipid levels. |
Disease/Trait | Cholesterol, total |
Initial sample | 94,595 European ancestry individuals |
Replication sample | 93,982 European ancestry individuals |
Region | 8q11.23 |
Chromosome id | chr8 |
Chromosome position | 54509054 |
Reported gene | SOX17 |
Mapped gene | LOC100129098 - SEC11B |
Upstream gene id | 100129098 |
Downstream gene id | 157708 |
SNP gene ids | |
Upstream gene distance | 38628 |
Downstream gene distance | 13436 |
SNP risk allele | rs10102164-A |
SNPs | rs10102164 |
Merged | 0 |
SNP id current | 10102164 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.21 |
P value | 0.00000000005 |
Pvalue mlog | 10.3010299956639 |
P value text | |
Or beta | 0.03 |
%95 Ci | [NR] unit increase |
Platform | NR [NR] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST002221 |