Human SNP ID | rs1009840 |
---|---|
Human chromosome | chr6 |
Human SNP position | 134225547 |
Pig chromosome | chr1 |
Pig SNP position | 33216008 |
PubMed ID | 25781172 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25781172 |
Study | Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation. |
Disease/Trait | Schizophrenia (inflammation and infection response interaction) |
Initial sample | 460 Ashkenazi Jewish schizophrenia cases, 241 Ashkenazi Jewish controls |
Replication sample | NA |
Region | 6q23.2 |
Chromosome id | chr6 |
Chromosome position | 134225547 |
Reported gene | SGK1, SLC2A12 |
Mapped gene | SGK1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6446 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1009840-? |
SNPs | rs1009840 |
Merged | 0 |
SNP id current | 1009840 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (anti-TOXO) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [516638] |
CNV | N |
Mapped trait | schizophrenia, Toxoplasma gondii seropositivity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0007047 |
Study accession | GCST002812 |