SNP Detail For rs1009840
1.Mapping Information
Human SNP ID rs1009840
Human chromosome chr6
Human SNP position 134225547
Pig chromosome chr1
Pig SNP position 33216008
2.Annotation Information
PubMed ID25781172
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25781172
StudyInfection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.
Disease/TraitSchizophrenia (inflammation and infection response interaction)
Initial sample460 Ashkenazi Jewish schizophrenia cases, 241 Ashkenazi Jewish controls
Replication sampleNA
Region6q23.2
Chromosome idchr6
Chromosome position134225547
Reported geneSGK1, SLC2A12
Mapped geneSGK1
Upstream gene id
Downstream gene id
SNP gene ids6446
Upstream gene distance
Downstream gene distance
SNP risk allelers1009840-?
SNPsrs1009840
Merged0
SNP id current1009840
Contextintron_variant
Intergenic0
Allele frequency
P value0.000008
Pvalue mlog5.09691001300805
P value text(anti-TOXO)
Or beta
%95 Ci
PlatformAffymetrix [516638]
CNVN
Mapped traitschizophrenia, Toxoplasma gondii seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0007047
Study accessionGCST002812