SNP Detail For rs1009080
1.Mapping Information
Human SNP ID rs1009080
Human chromosome chr1
Human SNP position 29958713
Pig chromosome chr6
Pig SNP position 80615644
2.Annotation Information
PubMed ID21926974
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21926974
StudyGenome-wide association study identifies five new schizophrenia loci.
Disease/TraitSchizophrenia
Initial sample9,394 European ancestry cases, 12,462 European ancestry controls
Replication sample8,442 European ancestry cases, 21,397 European ancestry controls
Region1p35.2
Chromosome idchr1
Chromosome position29958713
Reported geneNR
Mapped geneLOC101928460 - LOC101929406
Upstream gene id101928460
Downstream gene id101929406
SNP gene ids
Upstream gene distance608599
Downstream gene distance55239
SNP risk allelers1009080-?
SNPsrs1009080
Merged0
SNP id current1009080
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.09
%95 Ci[1.05-1.13]
PlatformAffymetrix, Illumina [1252901] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001242