Human SNP ID | rs1009080 |
---|---|
Human chromosome | chr1 |
Human SNP position | 29958713 |
Pig chromosome | chr6 |
Pig SNP position | 80615644 |
PubMed ID | 21926974 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21926974 |
Study | Genome-wide association study identifies five new schizophrenia loci. |
Disease/Trait | Schizophrenia |
Initial sample | 9,394 European ancestry cases, 12,462 European ancestry controls |
Replication sample | 8,442 European ancestry cases, 21,397 European ancestry controls |
Region | 1p35.2 |
Chromosome id | chr1 |
Chromosome position | 29958713 |
Reported gene | NR |
Mapped gene | LOC101928460 - LOC101929406 |
Upstream gene id | 101928460 |
Downstream gene id | 101929406 |
SNP gene ids | |
Upstream gene distance | 608599 |
Downstream gene distance | 55239 |
SNP risk allele | rs1009080-? |
SNPs | rs1009080 |
Merged | 0 |
SNP id current | 1009080 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.05-1.13] |
Platform | Affymetrix, Illumina [1252901] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001242 |