Human SNP ID | rs10090117 |
---|---|
Human chromosome | chr8 |
Human SNP position | 18523725 |
Pig chromosome | chr17 |
Pig SNP position | 14047788 |
PubMed ID | 23776197 |
---|---|
Journal | J Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23776197 |
Study | Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy. |
Disease/Trait | Paclitaxel-induced neuropathy |
Initial sample | 143 European ancestry individuals |
Replication sample | |
Region | 8p22 |
Chromosome id | chr8 |
Chromosome position | 18523725 |
Reported gene | NAT2, PSD3 |
Mapped gene | NAT2 - PSD3 |
Upstream gene id | 10 |
Downstream gene id | 23362 |
SNP gene ids | |
Upstream gene distance | 122506 |
Downstream gene distance | 3578 |
SNP risk allele | rs10090117-G |
SNPs | rs10090117 |
Merged | 0 |
SNP id current | 10090117 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.21 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 2.38 |
%95 Ci | [1.64-3.44] |
Platform | Illumina [518577] |
CNV | N |
Mapped trait | brain serotonin transporter measurement, response to paclitaxel |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004569, http://purl.obolibrary.org/obo/GO_1901555 |
Study accession | GCST002074 |