SNP Detail For rs10090117
1.Mapping Information
Human SNP ID rs10090117
Human chromosome chr8
Human SNP position 18523725
Pig chromosome chr17
Pig SNP position 14047788
2.Annotation Information
PubMed ID23776197
JournalJ Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23776197
StudyGenome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.
Disease/TraitPaclitaxel-induced neuropathy
Initial sample143 European ancestry individuals
Replication sample
Region8p22
Chromosome idchr8
Chromosome position18523725
Reported geneNAT2, PSD3
Mapped geneNAT2 - PSD3
Upstream gene id10
Downstream gene id23362
SNP gene ids
Upstream gene distance122506
Downstream gene distance3578
SNP risk allelers10090117-G
SNPsrs10090117
Merged0
SNP id current10090117
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.21
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta2.38
%95 Ci[1.64-3.44]
PlatformIllumina [518577]
CNVN
Mapped traitbrain serotonin transporter measurement, response to paclitaxel
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004569, http://purl.obolibrary.org/obo/GO_1901555
Study accessionGCST002074