Human SNP ID | rs10089517 |
---|---|
Human chromosome | chr8 |
Human SNP position | 59266162 |
Pig chromosome | chr4 |
Pig SNP position | 80455933 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Visceral adipose tissue/subcutaneous adipose tissue ratio |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 8q12.1 |
Chromosome id | chr8 |
Chromosome position | 59266162 |
Reported gene | TOX |
Mapped gene | LOC100505501 - NUDT15P1 |
Upstream gene id | 100505501 |
Downstream gene id | 574532 |
SNP gene ids | |
Upstream gene distance | 144815 |
Downstream gene distance | 290537 |
SNP risk allele | rs10089517-C |
SNPs | rs10089517 |
Merged | 0 |
SNP id current | 10089517 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.71 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (overall) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | visceral:subcutaneous adipose tissue ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004767 |
Study accession | GCST001524 |
PubMed ID | 25233373 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25233373 |
Study | Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 Loci. |
Disease/Trait | Hyperopia |
Initial sample | 7,068 European ancestry cases, 6,844 European ancestry controls |
Replication sample | 1,554 European ancestry cases, 892 cases, 1,654 European ancestry controls, 2,921 controls |
Region | 8q12.1 |
Chromosome id | chr8 |
Chromosome position | 59266162 |
Reported gene | TOX |
Mapped gene | LOC100505501 - NUDT15P1 |
Upstream gene id | 100505501 |
Downstream gene id | 574532 |
SNP gene ids | |
Upstream gene distance | 144815 |
Downstream gene distance | 290537 |
SNP risk allele | rs10089517-? |
SNPs | rs10089517 |
Merged | 0 |
SNP id current | 10089517 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [up to 3397980] (imputed) |
CNV | N |
Mapped trait | hypermetropia |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0000540 |
Study accession | GCST002617 |