SNP Detail For rs10086908
1.Mapping Information
Human SNP ID rs10086908
Human chromosome chr8
Human SNP position 126999692
Pig chromosome chr4
Pig SNP position 13438275
2.Annotation Information
PubMed ID26034056
JournalCancer Discov
Linkwww.ncbi.nlm.nih.gov/pubmed/26034056
StudyA large multi-ethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.
Disease/TraitProstate cancer
Initial sample6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls
Replication sample4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls
Region8q24.21
Chromosome idchr8
Chromosome position126999692
Reported geneNR
Mapped geneLOC105375753 - PCAT1
Upstream gene id105375753
Downstream gene id100750225
SNP gene ids
Upstream gene distance152705
Downstream gene distance13462
SNP risk allelers10086908-T
SNPsrs10086908
Merged
SNP id current10086908
Contextintron_variant
Intergenic1
Allele frequency0.71
P value0.0000000002
Pvalue mlog9.69897000433601
P value text(European)
Or beta1.17
%95 Ci[1.12-1.23]
PlatformAffymetrix [up to 19977088] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002944
PubMed ID26034056
JournalCancer Discov
Linkwww.ncbi.nlm.nih.gov/pubmed/26034056
StudyA large multi-ethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.
Disease/TraitProstate cancer
Initial sample6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls
Replication sample4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls
Region8q24.21
Chromosome idchr8
Chromosome position126999692
Reported geneNR
Mapped geneLOC105375753 - PCAT1
Upstream gene id105375753
Downstream gene id100750225
SNP gene ids
Upstream gene distance152705
Downstream gene distance13462
SNP risk allelers10086908-T
SNPsrs10086908
Merged
SNP id current10086908
Contextintron_variant
Intergenic1
Allele frequency0.71
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta1.17
%95 Ci[1.12-1.22]
PlatformAffymetrix [up to 19977088] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002944
PubMed ID22219177
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/22219177
StudyA genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
Disease/TraitProstate cancer (gene x gene interaction)
Initial sample4,723 European ancestry cases, 4,792 European ancestry controls
Replication sampleNA
Region4q25 x 8q24.21
Chromosome idchr4 x 8
Chromosome position113079800 x 126999692
Reported geneANK2 x NR
Mapped geneANK2 x LOC105375753 - PCAT1
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers7694725-? x rs10086908-?
SNPsrs7694725 x rs10086908
Merged
SNP id current
Contextintron_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.36
%95 Ci[1.20-1.55]
PlatformAffymetrix, Illumina [1117531] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001370
PubMed ID22219177
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/22219177
StudyA genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
Disease/TraitProstate cancer (gene x gene interaction)
Initial sample4,723 European ancestry cases, 4,792 European ancestry controls
Replication sampleNA
Region6p22.3 x 8q24.21
Chromosome idchr6 x 8
Chromosome position17813594 x 126999692
Reported geneKIF13A x NR
Mapped geneKIF13A x LOC105375753 - PCAT1
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers10456809-? x rs10086908-?
SNPsrs10456809 x rs10086908
Merged
SNP id current
Contextintron_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.25
%95 Ci[1.14-1.38]
PlatformAffymetrix, Illumina [1117531] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001370