Human SNP ID | rs1007738 |
---|---|
Human chromosome | chr11 |
Human SNP position | 46827809 |
Pig chromosome | chr2 |
Pig SNP position | 16946756 |
PubMed ID | 19079262 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19079262 |
Study | New sequence variants associated with bone mineral density. |
Disease/Trait | Bone mineral density (hip) |
Initial sample | 6,865 European ancestry individuals |
Replication sample | 8,510 European ancestry individuals |
Region | 11p11.2 |
Chromosome id | chr11 |
Chromosome position | 46827809 |
Reported gene | LRP4 |
Mapped gene | CKAP5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9793 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1007738-A |
SNPs | rs1007738 |
Merged | 0 |
SNP id current | 1007738 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.77 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 0.08 |
%95 Ci | [0.05-0.11] s.d. decrease |
Platform | Illumina [305051] |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000297 |