SNP Detail For rs1007738
1.Mapping Information
Human SNP ID rs1007738
Human chromosome chr11
Human SNP position 46827809
Pig chromosome chr2
Pig SNP position 16946756
2.Annotation Information
PubMed ID19079262
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19079262
StudyNew sequence variants associated with bone mineral density.
Disease/TraitBone mineral density (hip)
Initial sample6,865 European ancestry individuals
Replication sample8,510 European ancestry individuals
Region11p11.2
Chromosome idchr11
Chromosome position46827809
Reported geneLRP4
Mapped geneCKAP5
Upstream gene id
Downstream gene id
SNP gene ids9793
Upstream gene distance
Downstream gene distance
SNP risk allelers1007738-A
SNPsrs1007738
Merged0
SNP id current1007738
Contextintron_variant
Intergenic0
Allele frequency0.77
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta0.08
%95 Ci[0.05-0.11] s.d. decrease
PlatformIllumina [305051]
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST000297