Human SNP ID | rs1006899 |
---|---|
Human chromosome | chr21 |
Human SNP position | 14472731 |
Pig chromosome | chr13 |
Pig SNP position | 189655933 |
PubMed ID | 19079262 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19079262 |
Study | New sequence variants associated with bone mineral density. |
Disease/Trait | Bone mineral density (spine) |
Initial sample | 6,865 European ancestry individuals |
Replication sample | 8,510 European ancestry individuals |
Region | 21q11.2 |
Chromosome id | chr21 |
Chromosome position | 14472731 |
Reported gene | NR |
Mapped gene | LOC105369304 - LOC105369290 |
Upstream gene id | 105369304 |
Downstream gene id | 105369290 |
SNP gene ids | |
Upstream gene distance | 78700 |
Downstream gene distance | 4598 |
SNP risk allele | rs1006899-A |
SNPs | rs1006899 |
Merged | 0 |
SNP id current | 1006899 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.84 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 0.09 |
%95 Ci | [0.05-0.13] s.d. decrease |
Platform | Illumina [305051] |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000295 |