SNP Detail For rs1006899
1.Mapping Information
Human SNP ID rs1006899
Human chromosome chr21
Human SNP position 14472731
Pig chromosome chr13
Pig SNP position 189655933
2.Annotation Information
PubMed ID19079262
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19079262
StudyNew sequence variants associated with bone mineral density.
Disease/TraitBone mineral density (spine)
Initial sample6,865 European ancestry individuals
Replication sample8,510 European ancestry individuals
Region21q11.2
Chromosome idchr21
Chromosome position14472731
Reported geneNR
Mapped geneLOC105369304 - LOC105369290
Upstream gene id105369304
Downstream gene id105369290
SNP gene ids
Upstream gene distance78700
Downstream gene distance4598
SNP risk allelers1006899-A
SNPsrs1006899
Merged0
SNP id current1006899
Contextintergenic_variant
Intergenic1
Allele frequency0.84
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.09
%95 Ci[0.05-0.13] s.d. decrease
PlatformIllumina [305051]
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST000295