SNP Detail For rs10056340
1.Mapping Information
Human SNP ID rs10056340
Human chromosome chr5
Human SNP position 110854353
Pig chromosome chr2
Pig SNP position 120125748
2.Annotation Information
PubMed ID23817571
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23817571
StudyMeta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.
Disease/TraitAllergic sensitization
Initial sample5,789 European ancestry cases, 10,056 European ancestry controls
Replication sample6,114 European ancestry cases, 9,920 European ancestry controls
Region5q22.1
Chromosome idchr5
Chromosome position110854353
Reported geneTSLP, SLC25A46, WDR36, CAMK4
Mapped geneSLC25A46 - BCLAF1P1
Upstream gene id91137
Downstream gene id728366
SNP gene ids
Upstream gene distance89192
Downstream gene distance91920
SNP risk allelers10056340-G
SNPsrs10056340
Merged0
SNP id current10056340
Contextintergenic_variant
Intergenic1
Allele frequency0.17
P value0.00000000000005
Pvalue mlog13.3010299956639
P value text
Or beta1.2
%95 Ci[1.15-1.28]
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitallergic sensitization measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005298
Study accessionGCST002084