Human SNP ID | rs10056340 |
---|---|
Human chromosome | chr5 |
Human SNP position | 110854353 |
Pig chromosome | chr2 |
Pig SNP position | 120125748 |
PubMed ID | 23817571 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23817571 |
Study | Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization. |
Disease/Trait | Allergic sensitization |
Initial sample | 5,789 European ancestry cases, 10,056 European ancestry controls |
Replication sample | 6,114 European ancestry cases, 9,920 European ancestry controls |
Region | 5q22.1 |
Chromosome id | chr5 |
Chromosome position | 110854353 |
Reported gene | TSLP, SLC25A46, WDR36, CAMK4 |
Mapped gene | SLC25A46 - BCLAF1P1 |
Upstream gene id | 91137 |
Downstream gene id | 728366 |
SNP gene ids | |
Upstream gene distance | 89192 |
Downstream gene distance | 91920 |
SNP risk allele | rs10056340-G |
SNPs | rs10056340 |
Merged | 0 |
SNP id current | 10056340 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.17 |
P value | 0.00000000000005 |
Pvalue mlog | 13.3010299956639 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.15-1.28] |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | allergic sensitization measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005298 |
Study accession | GCST002084 |