SNP Detail For rs10052004
1.Mapping Information
Human SNP ID rs10052004
Human chromosome chr5
Human SNP position 57370673
Pig chromosome chr16
Pig SNP position 38778744
2.Annotation Information
PubMed ID23212062
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23212062
StudyGenome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.
Disease/TraitSchizophrenia
Initial sample2,454 European ancestry cases
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position57370673
Reported geneintergenic
Mapped geneGPBP1 - ACTBL2
Upstream gene id65056
Downstream gene id345651
SNP gene ids
Upstream gene distance105994
Downstream gene distance109343
SNP risk allelers10052004-?
SNPsrs10052004
Merged0
SNP id current10052004
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(Positive symptoms)
Or beta0.0921
%95 Ci[NR] unit decrease
PlatformAffymetrix [696491]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001757