Human SNP ID | rs10052004 |
---|---|
Human chromosome | chr5 |
Human SNP position | 57370673 |
Pig chromosome | chr16 |
Pig SNP position | 38778744 |
PubMed ID | 23212062 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23212062 |
Study | Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms. |
Disease/Trait | Schizophrenia |
Initial sample | 2,454 European ancestry cases |
Replication sample | NA |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 57370673 |
Reported gene | intergenic |
Mapped gene | GPBP1 - ACTBL2 |
Upstream gene id | 65056 |
Downstream gene id | 345651 |
SNP gene ids | |
Upstream gene distance | 105994 |
Downstream gene distance | 109343 |
SNP risk allele | rs10052004-? |
SNPs | rs10052004 |
Merged | 0 |
SNP id current | 10052004 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (Positive symptoms) |
Or beta | 0.0921 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix [696491] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001757 |