SNP Detail For rs10045413
1.Mapping Information
Human SNP ID rs10045413
Human chromosome chr5
Human SNP position 135565466
Pig chromosome chr2
Pig SNP position 143458570
2.Annotation Information
PubMed ID21685187
JournalThorax
Linkwww.ncbi.nlm.nih.gov/pubmed/21685187
StudyGenome-wide association study of smoking behaviours in patients with COPD.
Disease/TraitAge at smoking initiation in chronic obstructive pulmonary disease
Initial sample3,397 European ancestry cases
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position135565466
Reported geneCXCL14
Mapped geneNEUROG1 - CXCL14
Upstream gene id4762
Downstream gene id9547
SNP gene ids
Upstream gene distance29517
Downstream gene distance5213
SNP risk allelers10045413-T
SNPsrs10045413
Merged0
SNP id current10045413
Contextintron_variant
Intergenic1
Allele frequency0.68
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.039
%95 Ciunit increase
PlatformIllumina [~ 6300000] (imputed)
CNVN
Mapped traitchronic obstructive pulmonary disease, smoking initiation
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0005670
Study accessionGCST001113