Human SNP ID | rs1004467 |
---|---|
Human chromosome | chr10 |
Human SNP position | 102834750 |
Pig chromosome | chr14 |
Pig SNP position | 123776394 |
PubMed ID | 19430479 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19430479 |
Study | Genome-wide association study of blood pressure and hypertension. |
Disease/Trait | Systolic blood pressure |
Initial sample | 29,136 European ancestry individuals |
Replication sample | 34,433 European ancestry individuals |
Region | 10q24.32 |
Chromosome id | chr10 |
Chromosome position | 102834750 |
Reported gene | CYP17A1 |
Mapped gene | CYP17A1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1586 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1004467-A |
SNPs | rs1004467 |
Merged | 0 |
SNP id current | 1004467 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.9 |
P value | 0.0000000001 |
Pvalue mlog | 10 |
P value text | |
Or beta | 1.05 |
%95 Ci | [0.74-1.36] mm Hg increase |
Platform | Affymetrix, Illumina [2533153] (imputed) |
CNV | N |
Mapped trait | systolic blood pressure |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006335 |
Study accession | GCST000393 |
PubMed ID | 26343387 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26343387 |
Study | A comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease. |
Disease/Trait | Myocardial infarction |
Initial sample | 27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3 |
Replication sample | NA |
Region | 10q24.32 |
Chromosome id | chr10 |
Chromosome position | 102834750 |
Reported gene | CYP17A1, CNNM2, NT5C2 |
Mapped gene | CYP17A1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1586 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1004467-A |
SNPs | rs1004467 |
Merged | 0 |
SNP id current | 1004467 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.87 |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.05-1.11] |
Platform | Affymetrix, Illumina [8600000] (imputed) |
CNV | N |
Mapped trait | myocardial infarction |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000612 |
Study accession | GCST003117 |