SNP Detail For rs1004467
1.Mapping Information
Human SNP ID rs1004467
Human chromosome chr10
Human SNP position 102834750
Pig chromosome chr14
Pig SNP position 123776394
2.Annotation Information
PubMed ID19430479
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19430479
StudyGenome-wide association study of blood pressure and hypertension.
Disease/TraitSystolic blood pressure
Initial sample29,136 European ancestry individuals
Replication sample34,433 European ancestry individuals
Region10q24.32
Chromosome idchr10
Chromosome position102834750
Reported geneCYP17A1
Mapped geneCYP17A1
Upstream gene id
Downstream gene id
SNP gene ids1586
Upstream gene distance
Downstream gene distance
SNP risk allelers1004467-A
SNPsrs1004467
Merged0
SNP id current1004467
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.9
P value0.0000000001
Pvalue mlog10
P value text
Or beta1.05
%95 Ci[0.74-1.36] mm Hg increase
PlatformAffymetrix, Illumina [2533153] (imputed)
CNVN
Mapped traitsystolic blood pressure
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006335
Study accessionGCST000393
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitMyocardial infarction
Initial sample27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3
Replication sampleNA
Region10q24.32
Chromosome idchr10
Chromosome position102834750
Reported geneCYP17A1, CNNM2, NT5C2
Mapped geneCYP17A1
Upstream gene id
Downstream gene id
SNP gene ids1586
Upstream gene distance
Downstream gene distance
SNP risk allelers1004467-A
SNPsrs1004467
Merged0
SNP id current1004467
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.87
P value0.00000008
Pvalue mlog7.09691001300805
P value text
Or beta1.08
%95 Ci[1.05-1.11]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitmyocardial infarction
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000612
Study accessionGCST003117