SNP Detail For rs1003719
1.Mapping Information
Human SNP ID rs1003719
Human chromosome chr21
Human SNP position 37118795
Pig chromosome chr13
Pig SNP position 210827048
2.Annotation Information
PubMed ID20463881
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20463881
StudyDigital quantification of human eye color highlights genetic association of three new loci.
Disease/TraitEye color traits
Initial sample5,951 European ancestry individuals
Replication sample3,543 European ancestry individuals
Region21q22.13
Chromosome idchr21
Chromosome position37118795
Reported geneTTC3, DSCR9
Mapped geneTTC3
Upstream gene id
Downstream gene id
SNP gene ids7267
Upstream gene distance
Downstream gene distance
SNP risk allelers1003719-A
SNPsrs1003719
Merged0
SNP id current1003719
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000000002
Pvalue mlog9.69897000433601
P value text(CHS1)
Or beta0.1
%95 Ci[NR] % decrease
PlatformIllumina [2543887] (imputed)
CNVN
Mapped traiteye color
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003949
Study accessionGCST000685