SNP Detail For rs10034852
1.Mapping Information
Human SNP ID rs10034852
Human chromosome chr4
Human SNP position 187693888
Pig chromosome chr17
Pig SNP position 8502190
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region4q35.2
Chromosome idchr4
Chromosome position187693888
Reported geneNR
Mapped geneLOC105377603
Upstream gene id
Downstream gene id
SNP gene ids105377603
Upstream gene distance
Downstream gene distance
SNP risk allelers10034852-T
SNPsrs10034852
Merged0
SNP id current10034852
Contextintergenic_variant
Intergenic0
Allele frequency0.0909
P value0.000005
Pvalue mlog5.30102999566398
P value text(Trans/trans-18:2, EA)
Or beta0.002
%95 Ci[0.0012-0.0028] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans fatty acid measurement, trans/trans-18:2 fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006826
Study accessionGCST002721