Human SNP ID | rs10032216 |
---|---|
Human chromosome | chr4 |
Human SNP position | 148748354 |
Pig chromosome | chr8 |
Pig SNP position | 85058161 |
PubMed ID | 23408906 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23408906 |
Study | A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function. |
Disease/Trait | Thyroid hormone levels |
Initial sample | up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males |
Replication sample | NA |
Region | 4q31.23 |
Chromosome id | chr4 |
Chromosome position | 148748354 |
Reported gene | NR3C2 |
Mapped gene | LOC105377482 - LOC105377481 |
Upstream gene id | 105377482 |
Downstream gene id | 105377481 |
SNP gene ids | |
Upstream gene distance | 27997 |
Downstream gene distance | 35539 |
SNP risk allele | rs10032216-T |
SNPs | rs10032216 |
Merged | 0 |
SNP id current | 10032216 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.781 |
P value | 0.0000000000000009 |
Pvalue mlog | 15.0457574905606 |
P value text | (TSH) |
Or beta | 0.087 |
%95 Ci | [0.065-0.109] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | thyroid stimulating hormone measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004748 |
Study accession | GCST001856 |
PubMed ID | 23408906 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23408906 |
Study | A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function. |
Disease/Trait | Thyroid hormone levels |
Initial sample | up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males |
Replication sample | NA |
Region | 4q31.23 |
Chromosome id | chr4 |
Chromosome position | 148748354 |
Reported gene | NR3C2 |
Mapped gene | LOC105377482 - LOC105377481 |
Upstream gene id | 105377482 |
Downstream gene id | 105377481 |
SNP gene ids | |
Upstream gene distance | 27997 |
Downstream gene distance | 35539 |
SNP risk allele | rs10032216-T |
SNPs | rs10032216 |
Merged | 0 |
SNP id current | 10032216 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.781 |
P value | 0.0000000000002 |
Pvalue mlog | 12.698970004336 |
P value text | (TSH - Females) |
Or beta | 0.106 |
%95 Ci | [0.079-0.133] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | thyroid stimulating hormone measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004748 |
Study accession | GCST001856 |