SNP Detail For rs1002979
1.Mapping Information
Human SNP ID rs1002979
Human chromosome chr3
Human SNP position 112779033
Pig chromosome chr13
Pig SNP position 156692164
2.Annotation Information
PubMed ID22219177
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/22219177
StudyA genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
Disease/TraitProstate cancer (gene x gene interaction)
Initial sample4,723 European ancestry cases, 4,792 European ancestry controls
Replication sampleNA
Region3q13.2 x 2q31.1
Chromosome idchr3 x 2
Chromosome position112779033 x 172446825
Reported geneCD200R1L x ITAGA6
Mapped geneLOC101929694 - CD200R1L x ITGA6
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers1002979-? x rs12621278-?
SNPsrs1002979 x rs12621278
Merged0
SNP id current
Contextregulatory_region_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.5873
%95 Ci[1.32-1.92]
PlatformAffymetrix, Illumina [1117531] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001370