Human SNP ID | rs1002979 |
---|---|
Human chromosome | chr3 |
Human SNP position | 112779033 |
Pig chromosome | chr13 |
Pig SNP position | 156692164 |
PubMed ID | 22219177 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 3q13.2 x 2q31.1 |
Chromosome id | chr3 x 2 |
Chromosome position | 112779033 x 172446825 |
Reported gene | CD200R1L x ITAGA6 |
Mapped gene | LOC101929694 - CD200R1L x ITGA6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1002979-? x rs12621278-? |
SNPs | rs1002979 x rs12621278 |
Merged | 0 |
SNP id current | |
Context | regulatory_region_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.5873 |
%95 Ci | [1.32-1.92] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |