Human SNP ID | rs10028213 |
---|---|
Human chromosome | chr4 |
Human SNP position | 148731458 |
Pig chromosome | chr8 |
Pig SNP position | 85076393 |
PubMed ID | 22494929 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22494929 |
Study | Meta-analysis of two genome-wide association studies identifies four genetic loci associated with thyroid function. |
Disease/Trait | Thyroid function |
Initial sample | 3,736 European ancestry individuals |
Replication sample | 3,727 European ancestry individuals |
Region | 4q31.23 |
Chromosome id | chr4 |
Chromosome position | 148731458 |
Reported gene | NR3C2 |
Mapped gene | LOC105377482 - LOC105377481 |
Upstream gene id | 105377482 |
Downstream gene id | 105377481 |
SNP gene ids | |
Upstream gene distance | 11101 |
Downstream gene distance | 52435 |
SNP risk allele | rs10028213-C |
SNPs | rs10028213 |
Merged | 0 |
SNP id current | 10028213 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.823 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 0.084 |
%95 Ci | [0.059-0.109] unit increase |
Platform | Affymetrix, Illumina [2524918] (imputed) |
CNV | N |
Mapped trait | thyroid function |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004296 |
Study accession | GCST001487 |