SNP Detail For rs10028213
1.Mapping Information
Human SNP ID rs10028213
Human chromosome chr4
Human SNP position 148731458
Pig chromosome chr8
Pig SNP position 85076393
2.Annotation Information
PubMed ID22494929
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22494929
StudyMeta-analysis of two genome-wide association studies identifies four genetic loci associated with thyroid function.
Disease/TraitThyroid function
Initial sample3,736 European ancestry individuals
Replication sample3,727 European ancestry individuals
Region4q31.23
Chromosome idchr4
Chromosome position148731458
Reported geneNR3C2
Mapped geneLOC105377482 - LOC105377481
Upstream gene id105377482
Downstream gene id105377481
SNP gene ids
Upstream gene distance11101
Downstream gene distance52435
SNP risk allelers10028213-C
SNPsrs10028213
Merged0
SNP id current10028213
Contextintergenic_variant
Intergenic1
Allele frequency0.823
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta0.084
%95 Ci[0.059-0.109] unit increase
PlatformAffymetrix, Illumina [2524918] (imputed)
CNVN
Mapped traitthyroid function
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004296
Study accessionGCST001487