SNP Detail For rs10010758
1.Mapping Information
Human SNP ID rs10010758
Human chromosome chr4
Human SNP position 37936897
Pig chromosome chr8
Pig SNP position 30830532
2.Annotation Information
PubMed ID22699663
JournalJ Dent Res
Linkwww.ncbi.nlm.nih.gov/pubmed/22699663
StudyGenome-wide association study of periodontal pathogen colonization.
Disease/TraitPeriodontal microbiota
Initial sample1,020 European ancestry individuals
Replication sampleNA
Region4p14
Chromosome idchr4
Chromosome position37936897
Reported geneTBC1D1, PTTG2
Mapped geneLOC105374407, TBC1D1
Upstream gene id
Downstream gene id
SNP gene ids105374407, 23216
Upstream gene distance
Downstream gene distance
SNP risk allelers10010758-C
SNPsrs10010758
Merged0
SNP id current10010758
Contextintron_variant
Intergenic0
Allele frequency0.291
P value0.000004
Pvalue mlog5.39794000867203
P value text(Red)
Or beta1.91
%95 Ci[1.45-2.51]
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST001588