Human SNP ID | rs10010758 |
---|---|
Human chromosome | chr4 |
Human SNP position | 37936897 |
Pig chromosome | chr8 |
Pig SNP position | 30830532 |
PubMed ID | 22699663 |
---|---|
Journal | J Dent Res |
Link | www.ncbi.nlm.nih.gov/pubmed/22699663 |
Study | Genome-wide association study of periodontal pathogen colonization. |
Disease/Trait | Periodontal microbiota |
Initial sample | 1,020 European ancestry individuals |
Replication sample | NA |
Region | 4p14 |
Chromosome id | chr4 |
Chromosome position | 37936897 |
Reported gene | TBC1D1, PTTG2 |
Mapped gene | LOC105374407, TBC1D1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105374407, 23216 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10010758-C |
SNPs | rs10010758 |
Merged | 0 |
SNP id current | 10010758 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.291 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (Red) |
Or beta | 1.91 |
%95 Ci | [1.45-2.51] |
Platform | Affymetrix [~ 2500000] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST001588 |