Human SNP ID | rs1000778 |
---|---|
Human chromosome | chr11 |
Human SNP position | 61887833 |
Pig chromosome | chr2 |
Pig SNP position | 9175395 |
PubMed ID | 19798445 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19798445 |
Study | Genetic determinants of circulating sphingolipid concentrations in European populations. |
Disease/Trait | Sphingolipid levels |
Initial sample | 4,110 European ancestry individuals |
Replication sample | NA |
Region | 11q12.2 |
Chromosome id | chr11 |
Chromosome position | 61887833 |
Reported gene | FADS3 |
Mapped gene | FADS3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3995 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1000778-A |
SNPs | rs1000778 |
Merged | 0 |
SNP id current | 1000778 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.0000000000007 |
Pvalue mlog | 12.1549019599857 |
P value text | (SM 16:1) |
Or beta | 0.62 |
%95 Ci | [0.45-0.78] unit decrease |
Platform | Illumina [318237] |
CNV | N |
Mapped trait | sphingolipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004622 |
Study accession | GCST000493 |