SNP Detail For rs1000778
1.Mapping Information
Human SNP ID rs1000778
Human chromosome chr11
Human SNP position 61887833
Pig chromosome chr2
Pig SNP position 9175395
2.Annotation Information
PubMed ID19798445
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19798445
StudyGenetic determinants of circulating sphingolipid concentrations in European populations.
Disease/TraitSphingolipid levels
Initial sample4,110 European ancestry individuals
Replication sampleNA
Region11q12.2
Chromosome idchr11
Chromosome position61887833
Reported geneFADS3
Mapped geneFADS3
Upstream gene id
Downstream gene id
SNP gene ids3995
Upstream gene distance
Downstream gene distance
SNP risk allelers1000778-A
SNPsrs1000778
Merged0
SNP id current1000778
Contextintron_variant
Intergenic0
Allele frequency0.32
P value0.0000000000007
Pvalue mlog12.1549019599857
P value text(SM 16:1)
Or beta0.62
%95 Ci[0.45-0.78] unit decrease
PlatformIllumina [318237]
CNVN
Mapped traitsphingolipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004622
Study accessionGCST000493