Human SNP ID | rs1000597 |
---|---|
Human chromosome | chr7 |
Human SNP position | 30897563 |
Pig chromosome | chr18 |
Pig SNP position | 46408571 |
PubMed ID | 22396660 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22396660 |
Study | A genome-wide association study of nephrolithiasis in the Japanese population identifies novel susceptible Loci at 5q35.3, 7p14.3, and 13q14.1. |
Disease/Trait | Nephrolithiasis |
Initial sample | 904 Japanese ancestry cases, 7,471 Japanese ancestry controls |
Replication sample | 4,892 Japanese ancestry cases, 9,873 Japanese ancestry controls |
Region | 7p14.3 |
Chromosome id | chr7 |
Chromosome position | 30897563 |
Reported gene | INMT, FAM188B, AQP1 |
Mapped gene | INMT-FAM188B - AQP1 |
Upstream gene id | 100526825 |
Downstream gene id | 358 |
SNP gene ids | |
Upstream gene distance | 5176 |
Downstream gene distance | 14237 |
SNP risk allele | rs1000597-? |
SNPs | rs1000597 |
Merged | 0 |
SNP id current | 1000597 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000000000002 |
Pvalue mlog | 13.698970004336 |
P value text | |
Or beta | 1.22 |
%95 Ci | [1.16-1.29] |
Platform | Illumina [556249] |
CNV | N |
Mapped trait | nephrolithiasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004253 |
Study accession | GCST001432 |